User InterfaceΒΆ
- analysis
- espressopp.analysis.AllParticlePos
- espressopp.analysis.AnalysisBase
- espressopp.analysis.Autocorrelation
- espressopp.analysis.CMVelocity
- espressopp.analysis.ConfigsParticleDecomp
- espressopp.analysis.Configurations
- espressopp.analysis.ConfigurationsExt
- espressopp.analysis.Energy
- espressopp.analysis.IntraChainDistSq
- espressopp.analysis.MeanSquareDispl
- espressopp.analysis.MeanSquareInternalDist
- espressopp.analysis.NPartSubregion
- espressopp.analysis.Observable
- espressopp.analysis.AdressDensity
- espressopp.analysis.CenterOfMass
- espressopp.analysis.MaxPID
- espressopp.analysis.NeighborFluctuation
- espressopp.analysis.NPart
- espressopp.analysis.PotentialEnergy
- espressopp.analysis.Pressure
- espressopp.analysis.RadialDistrF
- espressopp.analysis.RDFatomistic
- espressopp.analysis.StaticStructF
- espressopp.analysis.XDensity
- espressopp.analysis.XPressure
- espressopp.analysis.XTemperature
- espressopp.analysis.RadGyrXProfilePI
- espressopp.analysis.RDFatomistic
- espressopp.analysis.SubregionTracking
- espressopp.analysis.SystemMonitor
- espressopp.analysis.Velocities
- espressopp.analysis.VelocityAutocorrelation
- espressopp.analysis.Viscosity
- bc
- check
- esutil
- external
- integrator
- espressopp.integrator.Adress
- espressopp.integrator.AssociationReaction
- espressopp.integrator.BerendsenBarostat
- espressopp.integrator.BerendsenBarostatAnisotropic
- espressopp.integrator.BerendsenThermostat
- espressopp.integrator.CapForce
- espressopp.integrator.DPDThermostat
- espressopp.integrator.EmptyExtension
- espressopp.integrator.ExtAnalyze
- espressopp.integrator.Extension
- espressopp.integrator.ExtForce
- espressopp.integrator.FixPositions
- espressopp.integrator.FreeEnergyCompensation
- espressopp.integrator.GeneralizedLangevinThermostat
- espressopp.integrator.Isokinetic
- espressopp.integrator.LangevinBarostat
- espressopp.integrator.LangevinThermostat
- espressopp.integrator.LangevinThermostat1D
- espressopp.integrator.LangevinThermostatHybrid
- espressopp.integrator.LangevinThermostatOnGroup
- espressopp.integrator.LangevinThermostatOnRadius
- espressopp.integrator.LatticeBoltzmann
- espressopp.integrator.LBInit
- espressopp.integrator.MDIntegrator
- espressopp.integrator.MinimizeEnergy
- espressopp.integrator.OnTheFlyFEC
- espressopp.integrator.PIAdressIntegrator
- espressopp.integrator.Rattle
- espressopp.integrator.Settle
- espressopp.integrator.StochasticVelocityRescaling
- espressopp.integrator.TDforce
- espressopp.integrator.VelocityVerlet
- espressopp.integrator.VelocityVerletRESPA
- espressopp.integrator.VelocityVerletOnGroup
- espressopp.integrator.VelocityVerletOnRadius
- interaction
- Angular
- Bonded
- Charged
- Constrained
- Dihedral
- Manybody
- Pair
- espressopp.interaction.GravityTruncated
- espressopp.interaction.LennardJones
- espressopp.interaction.LennardJonesAutoBonds
- espressopp.interaction.LennardJonesCapped
- espressopp.interaction.LennardJonesEnergyCapped
- espressopp.interaction.LennardJonesExpand
- espressopp.interaction.LennardJonesGeneric
- espressopp.interaction.LennardJonesGromacs
- espressopp.interaction.LennardJonesSoftcoreTI
- espressopp.interaction.LJcos
- espressopp.interaction.MirrorLennardJones
- Tabulated
- Wall
- Other
- espressopp.interaction.Interaction
- espressopp.interaction.Potential
- espressopp.interaction.PotentialVSpherePair
- espressopp.interaction.Quartic
- espressopp.interaction.ReactionFieldGeneralized
- espressopp.interaction.ReactionFieldGeneralizedTI
- espressopp.interaction.SingleParticlePotential
- espressopp.interaction.VSpherePair
- espressopp.interaction.VSphereSelf
- espressopp.interaction.Zero
- espressopp.interaction.SmoothSquareWell
- io
- espressopp
- espressopp.Exceptions
- espressopp.FixedLocalTupleList
- espressopp.FixedPairDistList
- espressopp.FixedPairList
- espressopp.FixedPairListAdress
- espressopp.FixedQuadrupleAngleList
- espressopp.FixedQuadrupleList
- espressopp.FixedQuadrupleListAdress
- espressopp.FixedSingleList
- espressopp.FixedTripleAngleList
- espressopp.FixedTripleList
- espressopp.FixedTripleListAdress
- espressopp.FixedTupleList
- espressopp.FixedTupleListAdress
- espressopp.Int3D
- espressopp.MultiSystem
- espressopp.ParallelTempering
- espressopp.Particle
- espressopp.ParticleAccess
- espressopp.ParticleGroup
- espressopp.pmi
- espressopp.Quaternion
- espressopp.Real3D
- espressopp.RealND
- espressopp.System
- espressopp.Tensor
- espressopp.VerletList
- espressopp.VerletListAdress
- espressopp.VerletListTriple
- espressopp.Version
- standard_system
- storage
- tools
- information and analysis
- initializing particles
- decomp - Domain Decomposition python functions
- DumpConfigurations - read/write xyz files
- espresso_old - read espressomd files
- gromacs - parser for Gromacs files
- io_extended - read/write configurational files
- lammps - read lammps files
- pathintegral - nuclear quantum effects
- PDB - read and write pdb format
- povwrite - write povray files
- prepareComplexMolecules - set up proteins
- prepareAdress - setup AdResS simulation
- PSF - read and write psf format
- tabulated - write tabulated file
- topology_helper
- units - convert to real units
- Logging mechanism